Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin | YT1_RS11905 | Not Available | Positive | 2325734 - 2326108 | 13251.8 |
| hypothetical protein | YT1_RS27250 | Not Available | Positive | 2326139 - 2326309 | 5881.05 |
| wax ester/triacylglycerol synthase family o-acyltransferase | YT1_RS11910 | Not Available | Positive | 2326479 - 2327870 | 50963.2 |
| carboxymuconolactone decarboxylase family protein | YT1_RS11915 | Not Available | Positive | 2327930 - 2328298 | 13079.4 |
| Trna-gly | Not Available | Not Available | Positive | 2328307 - 2328380 | Not Available |
| Trna-pro | Not Available | Not Available | Positive | 2328518 - 2328594 | Not Available |
| trigger factor | YT1_RS11930 | Not Available | Positive | 2328696 - 2330072 | 49731.8 |
| atp-dependent clp protease proteolytic subunit | YT1_RS11935 | Not Available | Positive | 2330254 - 2330880 | 22391.7 |
| atp-dependent clp protease proteolytic subunit | YT1_RS11940 | Not Available | Positive | 2330930 - 2331616 | 24654.4 |
| atp-dependent clp protease atp-binding subunit clpx | YT1_RS11945 | Not Available | Positive | 2331845 - 2333122 | 46522.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


