Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i polyketide synthase | YT1_RS11340 | Not Available | Positive | 2205575 - 2214829 | 322571.0 |
| holo-acp synthase | YT1_RS11345 | Not Available | Positive | 2214870 - 2215271 | 14239.9 |
| tetr family transcriptional regulator | YT1_RS11350 | Not Available | Negative | 2215283 - 2216080 | 30238.0 |
| cyclopropane mycolic acid synthase family methyltransferase | YT1_RS11355 | Not Available | Negative | 2216168 - 2217043 | 33358.7 |
| dipeptidase | YT1_RS11360 | Not Available | Positive | 2217231 - 2218565 | 46130.7 |
| thioredoxin-dependent thiol peroxidase | YT1_RS11365 | Not Available | Negative | 2218574 - 2219050 | 17106.2 |
| duf3618 domain-containing protein | YT1_RS11370 | Not Available | Positive | 2219125 - 2219346 | 8029.83 |
| l,d-transpeptidase family protein | YT1_RS11375 | Not Available | Positive | 2219582 - 2220349 | 27136.2 |
| mycofactocin-coupled sdr family oxidoreductase | YT1_RS11380 | Not Available | Negative | 2220390 - 2221226 | 29342.0 |
| Trna-lys | Not Available | Not Available | Positive | 2244359 - 2244431 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


