Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| p1 family peptidase | YT1_RS11295 | Not Available | Positive | 2199184 - 2200290 | 36163.9 |
| hypothetical protein | YT1_RS27190 | Not Available | Negative | 2200296 - 2200448 | 5465.52 |
| rhomboid family intramembrane serine protease | YT1_RS11300 | Not Available | Positive | 2200605 - 2201231 | 22038.1 |
| cyclic nucleotide-degrading phosphodiesterase | YT1_RS11305 | Not Available | Positive | 2201356 - 2202117 | 26569.3 |
| ribonuclease ph | YT1_RS11310 | Not Available | Positive | 2202131 - 2202919 | 27810.2 |
| rdgb/ham1 family non-canonical purine ntp pyrophosphatase | YT1_RS11315 | Not Available | Positive | 2202921 - 2203538 | 21444.1 |
| duf3817 domain-containing protein | YT1_RS11320 | Not Available | Negative | 2203680 - 2204066 | 14156.3 |
| hypothetical protein | YT1_RS11325 | Not Available | Negative | 2204063 - 2204482 | 15740.4 |
| Trna-leu | Not Available | Not Available | Positive | 2204551 - 2204635 | Not Available |
| hnh endonuclease | YT1_RS11335 | Not Available | Negative | 2204683 - 2205165 | 18019.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


