Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding protein | YT1_RS11245 | Not Available | Positive | 2191535 - 2191993 | 16618.4 |
| hypothetical protein | YT1_RS11250 | Not Available | Negative | 2192374 - 2192556 | 6664.81 |
| hypothetical protein | YT1_RS11255 | Not Available | Negative | 2192604 - 2192798 | 6014.57 |
| gaf and antar domain-containing protein | YT1_RS11260 | Not Available | Positive | 2193072 - 2193773 | 25506.6 |
| cold-shock protein | YT1_RS11265 | Not Available | Negative | 2193803 - 2194006 | 7269.55 |
| atp-dependent dna helicase | YT1_RS11270 | Not Available | Negative | 2194135 - 2196165 | 71635.9 |
| isochorismatase family protein | YT1_RS11275 | Not Available | Negative | 2196191 - 2196769 | 20156.3 |
| nicotinate phosphoribosyltransferase | YT1_RS11280 | Not Available | Negative | 2196775 - 2198121 | 47385.2 |
| atp-dependent clp protease adapter clps | YT1_RS11285 | Not Available | Positive | 2198170 - 2198553 | 13870.5 |
| duf2017 domain-containing protein | YT1_RS11290 | Not Available | Positive | 2198609 - 2199187 | 20778.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


