Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cob(i)yrinic acid a,c-diamide adenosyltransferase | YT1_RS11145 | Not Available | Negative | 2165709 - 2166281 | 20537.3 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | YT1_RS11150 | Not Available | Positive | 2166338 - 2167600 | 44417.6 |
| 16s ribosomal rna | Not Available | Not Available | Positive | 2168239 - 2169761 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 2170060 - 2173192 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 2173298 - 2173414 | Not Available |
| adenylate/guanylate cyclase domain-containing protein | YT1_RS11170 | Not Available | Negative | 2173508 - 2175052 | 54629.0 |
| endonuclease nucs | YT1_RS11175 | Not Available | Positive | 2175096 - 2175770 | 24947.0 |
| atp/gtp-binding protein | YT1_RS27645 | Not Available | Positive | 2175772 - 2176092 | 11800.5 |
| hypothetical protein | YT1_RS11185 | Not Available | Negative | 2176188 - 2177276 | 40080.5 |
| methylmalonyl-coa epimerase | YT1_RS11190 | Not Available | Negative | 2177384 - 2177866 | 16876.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


