Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | YT1_RS10995 | Not Available | Positive | 2135605 - 2136066 | 16849.2 |
| phage major capsid protein | YT1_RS11000 | Not Available | Positive | 2136240 - 2137085 | 28757.9 |
| hypothetical protein | YT1_RS11005 | Not Available | Positive | 2137100 - 2137504 | 13844.4 |
| hypothetical protein | YT1_RS11010 | Not Available | Negative | 2138272 - 2138880 | 21090.5 |
| Trna-arg | Not Available | Not Available | Positive | 2139033 - 2139108 | Not Available |
| phosphoketolase | YT1_RS11020 | Not Available | Positive | 2139350 - 2141740 | 89936.4 |
| duf305 domain-containing protein | YT1_RS11025 | Not Available | Negative | 2141794 - 2142498 | 24662.3 |
| duf3105 domain-containing protein | YT1_RS11030 | Not Available | Negative | 2142500 - 2143333 | 28816.8 |
| arginine--trna ligase | YT1_RS11035 | Not Available | Positive | 2143514 - 2145166 | 59242.0 |
| diaminopimelate decarboxylase | YT1_RS11040 | Not Available | Positive | 2145163 - 2146584 | 50247.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


