Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| shikimate 5-dehydrogenase | YT1_RS10855 | Not Available | Negative | 2106995 - 2107819 | 29089.6 |
| hnh endonuclease family protein | YT1_RS10860 | Not Available | Negative | 2107866 - 2108534 | 23843.0 |
| hypothetical protein | YT1_RS10865 | Not Available | Negative | 2108616 - 2108942 | 12059.2 |
| dead/deah box helicase | YT1_RS10870 | Not Available | Positive | 2109089 - 2111896 | 101528.0 |
| swim zinc finger family protein | YT1_RS10875 | Not Available | Positive | 2111893 - 2112651 | 27423.7 |
| coa-acylating methylmalonate-semialdehyde dehydrogenase | YT1_RS10880 | Not Available | Positive | 2112841 - 2114346 | 54157.4 |
| isobutyryl-coa dehydrogenase | YT1_RS10885 | Not Available | Positive | 2114360 - 2115514 | 41498.5 |
| enoyl-coa hydratase/isomerase family protein | YT1_RS10890 | Not Available | Positive | 2115511 - 2116572 | 37392.2 |
| 3-hydroxyisobutyrate dehydrogenase | YT1_RS10895 | Not Available | Positive | 2116574 - 2117482 | 30993.9 |
| enoyl-coa hydratase | YT1_RS10900 | Not Available | Positive | 2117479 - 2118255 | 27668.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


