Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| recombinase family protein | YT1_RS01845 | Not Available | Positive | 174368 - 175135 | 28322.8 |
| ybhb/ybcl family raf kinase inhibitor-like protein | YT1_RS01850 | Not Available | Negative | 175410 - 175946 | 18266.2 |
| mfs transporter | YT1_RS01855 | Not Available | Negative | 176250 - 177593 | 46903.4 |
| atp-binding protein | YT1_RS01860 | Not Available | Negative | 177938 - 178708 | 28352.6 |
| is21 family transposase | YT1_RS01865 | Not Available | Negative | 178705 - 180273 | 58798.0 |
| helix-turn-helix transcriptional regulator | YT1_RS01870 | Not Available | Positive | 180439 - 180978 | 19857.8 |
| 4-carboxymuconolactone decarboxylase | YT1_RS01875 | Not Available | Negative | 181347 - 182546 | 42066.0 |
| lyase family protein | YT1_RS01880 | Not Available | Negative | 182543 - 183787 | 43058.0 |
| protocatechuate 3,4-dioxygenase subunit alpha | YT1_RS01885 | Not Available | Negative | 183793 - 184362 | 19919.2 |
| protocatechuate 3,4-dioxygenase subunit beta | YT1_RS01890 | Not Available | Negative | 184359 - 185126 | 28730.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


