Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sensor histidine kinase | YT1_RS10660 | Not Available | Negative | 2067699 - 2069465 | 62070.6 |
| protein kinase domain-containing protein | YT1_RS10665 | Not Available | Positive | 2069613 - 2071277 | 58969.4 |
| t3ss (yopn, cest) and ybjn peptide-binding chaperone 1 | YT1_RS10670 | Not Available | Negative | 2071330 - 2072712 | 50433.3 |
| alpha/beta hydrolase | YT1_RS10675 | Not Available | Negative | 2072864 - 2073859 | 34853.3 |
| ws/dgat/mgat family o-acyltransferase | YT1_RS10680 | Not Available | Positive | 2074150 - 2075523 | 49323.3 |
| abc transporter atp-binding protein | YT1_RS10685 | Not Available | Negative | 2075530 - 2076318 | 28176.9 |
| abc transporter permease | YT1_RS10690 | Not Available | Negative | 2076315 - 2077109 | 28490.3 |
| abc transporter substrate-binding protein | YT1_RS10695 | Not Available | Negative | 2077090 - 2078118 | 37389.9 |
| tena family protein | YT1_RS10700 | Not Available | Negative | 2078115 - 2078834 | 25495.9 |
| carboxylesterase/lipase family protein | YT1_RS10705 | Not Available | Positive | 2079038 - 2080579 | 55949.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


