Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| excalibur calcium-binding domain-containing protein | YT1_RS27635 | Not Available | Positive | 2037639 - 2038589 | 34159.2 |
| alpha/beta fold hydrolase | YT1_RS10515 | Not Available | Positive | 2038801 - 2039139 | 12837.4 |
| protein kinase domain-containing protein | YT1_RS10520 | Not Available | Positive | 2039453 - 2040550 | 40506.9 |
| hypothetical protein | YT1_RS10525 | Not Available | Negative | 2040582 - 2041031 | 16628.2 |
| duf3558 domain-containing protein | YT1_RS10530 | Not Available | Negative | 2041129 - 2041752 | 21993.8 |
| hypothetical protein | YT1_RS10535 | Not Available | Negative | 2041749 - 2042081 | 11931.0 |
| hypothetical protein | YT1_RS10545 | Not Available | Positive | 2042618 - 2043997 | 49616.8 |
| hypothetical protein | YT1_RS10550 | Not Available | Positive | 2043994 - 2044305 | 10665.3 |
| hypothetical protein | YT1_RS10555 | Not Available | Positive | 2044305 - 2044589 | 9589.76 |
| gnat family n-acetyltransferase | YT1_RS10560 | Not Available | Positive | 2044656 - 2045870 | 44108.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


