Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isochorismatase family protein | YT1_RS10455 | Not Available | Positive | 2026832 - 2027470 | 22603.0 |
| sugar abc transporter substrate-binding protein | YT1_RS10460 | Not Available | Positive | 2027680 - 2028858 | 41409.8 |
| sugar abc transporter atp-binding protein | YT1_RS10465 | Not Available | Positive | 2028845 - 2030383 | 54420.2 |
| abc transporter permease | YT1_RS10470 | Not Available | Positive | 2030383 - 2031414 | 35358.1 |
| nadph-dependent fmn reductase | YT1_RS10475 | Not Available | Positive | 2031439 - 2031942 | 17380.9 |
| flavin reductase family protein | YT1_RS10480 | Not Available | Positive | 2031939 - 2032418 | 16717.9 |
| 3,4-dihydroxy-2-butanone-4-phosphate synthase | YT1_RS10485 | Not Available | Positive | 2032415 - 2033635 | 42772.4 |
| duf3558 domain-containing protein | YT1_RS10490 | Not Available | Negative | 2033726 - 2034349 | 22253.2 |
| hypothetical protein | YT1_RS10495 | Not Available | Negative | 2034346 - 2034678 | 12087.2 |
| hnh endonuclease | YT1_RS10500 | Not Available | Negative | 2035901 - 2036938 | 38393.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


