Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helicase-related protein | YT1_RS10405 | Not Available | Negative | 2011595 - 2015005 | 127452.0 |
| dead/deah box helicase | YT1_RS10410 | Not Available | Positive | 2015124 - 2017760 | 95853.0 |
| hypothetical protein | YT1_RS10415 | Not Available | Positive | 2018054 - 2018566 | 19528.9 |
| hypothetical protein | YT1_RS10420 | Not Available | Negative | 2018791 - 2019138 | 12639.1 |
| hypothetical protein | YT1_RS10425 | Not Available | Positive | 2019292 - 2020053 | 27755.1 |
| laci family dna-binding transcriptional regulator | YT1_RS10430 | Not Available | Positive | 2020401 - 2021453 | 37942.2 |
| pyrimidine utilization protein a | YT1_RS10435 | Not Available | Positive | 2021582 - 2022667 | 38969.3 |
| carbon-nitrogen hydrolase family protein | YT1_RS10440 | Not Available | Positive | 2022741 - 2023706 | 34198.9 |
| amidase | YT1_RS10445 | Not Available | Positive | 2023703 - 2025355 | 56303.0 |
| mfs transporter | YT1_RS10450 | Not Available | Positive | 2025348 - 2026835 | 50001.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


