Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)/fad-dependent oxidoreductase | YT1_RS10255 | Not Available | Positive | 1973964 - 1975220 | 44302.7 |
| alpha/beta fold hydrolase | YT1_RS10260 | Not Available | Positive | 1975336 - 1976193 | 30653.8 |
| voc family protein | YT1_RS10265 | Not Available | Positive | 1976216 - 1977118 | 32635.1 |
| aromatic ring-hydroxylating oxygenase subunit alpha | YT1_RS10270 | Not Available | Positive | 1977111 - 1978442 | 50167.4 |
| aromatic-ring-hydroxylating dioxygenase subunit beta | YT1_RS10275 | Not Available | Positive | 1978439 - 1978999 | 21857.6 |
| bifunctional 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit | YT1_RS10280 | Not Available | Positive | 1979011 - 1979385 | 13519.7 |
| 3-(cis-5,6-dihydroxycyclohexa-1, 3-dien-1-yl)propanoate dehydrogenase | YT1_RS10285 | Not Available | Positive | 1979372 - 1980169 | 27550.7 |
| 4-hydroxy-2-oxovalerate aldolase | YT1_RS10290 | Not Available | Negative | 1980246 - 1981271 | 36388.2 |
| acetaldehyde dehydrogenase (acetylating) | YT1_RS10295 | Not Available | Negative | 1981268 - 1982245 | 33800.4 |
| 2-keto-4-pentenoate hydratase | YT1_RS10300 | Not Available | Negative | 1982242 - 1983063 | 29088.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


