Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tigr03842 family llm class f420-dependent oxidoreductase | YT1_RS10160 | Not Available | Negative | 1953604 - 1954671 | 38205.1 |
| had family hydrolase | YT1_RS10165 | Not Available | Positive | 1954847 - 1955515 | 23080.7 |
| hypothetical protein | YT1_RS10170 | Not Available | Negative | 1955560 - 1956540 | 33076.9 |
| hypothetical protein | YT1_RS10175 | Not Available | Negative | 1956695 - 1958230 | 54527.4 |
| helix-turn-helix transcriptional regulator | YT1_RS10180 | Not Available | Positive | 1958351 - 1958572 | 8409.14 |
| hypothetical protein | YT1_RS27160 | Not Available | Negative | 1958600 - 1958758 | 5872.82 |
| duf429 domain-containing protein | YT1_RS10185 | Not Available | Positive | 1958919 - 1959719 | 27860.4 |
| pseudouridine-5'-phosphate glycosidase | YT1_RS10190 | Not Available | Positive | 1959775 - 1960692 | 31635.9 |
| coa-binding protein | YT1_RS10195 | Not Available | Negative | 1960761 - 1961177 | 14966.8 |
| hypothetical protein | YT1_RS10200 | Not Available | Positive | 1961379 - 1962170 | 28479.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


