Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flavodoxin domain-containing protein | YT1_RS10010 | Not Available | Negative | 1913042 - 1913563 | 18866.3 |
| sdr family oxidoreductase | YT1_RS10015 | Not Available | Negative | 1913645 - 1914298 | 22424.3 |
| type 1 glutamine amidotransferase | YT1_RS10020 | Not Available | Positive | 1914457 - 1915164 | 24891.6 |
| dihydrofolate reductase family protein | YT1_RS10025 | Not Available | Positive | 1915253 - 1915900 | 23739.7 |
| l-2-hydroxyglutarate oxidase | YT1_RS10030 | Not Available | Negative | 1915911 - 1917116 | 42305.9 |
| fad-dependent monooxygenase | YT1_RS10035 | Not Available | Negative | 1917226 - 1918422 | 44356.3 |
| mfs transporter | YT1_RS10040 | Not Available | Negative | 1918460 - 1919710 | 42940.5 |
| iclr family transcriptional regulator | YT1_RS10045 | Not Available | Positive | 1919759 - 1920601 | 30712.1 |
| cupin domain-containing protein | YT1_RS10050 | Not Available | Positive | 1920726 - 1921796 | 39419.1 |
| fumarylacetoacetate hydrolase family protein | YT1_RS10055 | Not Available | Positive | 1921803 - 1922624 | 29650.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


