Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is21 family transposase | YT1_RS01740 | Not Available | Negative | 146801 - 148351 | 55812.3 |
| duf4839 domain-containing protein | YT1_RS01745 | Not Available | Negative | 148605 - 149348 | 26257.2 |
| is21-like element helper atpase istb | YT1_RS01755 | Not Available | Negative | 149792 - 150580 | 28814.5 |
| is21 family transposase | YT1_RS01760 | Not Available | Negative | 150577 - 152088 | 54847.3 |
| helix-turn-helix transcriptional regulator | YT1_RS01765 | Not Available | Negative | 152879 - 153082 | 7046.68 |
| transposase family protein | YT1_RS01770 | Not Available | Positive | 153200 - 154030 | 29948.2 |
| gaf domain-containing protein | YT1_RS01775 | Not Available | Negative | 154024 - 154647 | 23108.8 |
| hypothetical protein | YT1_RS27065 | Not Available | Negative | 156543 - 157199 | 23306.6 |
| is3 family transposase | YT1_RS01785 | Not Available | Positive | 158010 - 159460 | 53180.2 |
| nucleotidyltransferase | YT1_RS01790 | Not Available | Positive | 159482 - 160408 | 33646.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


