Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diviva domain-containing protein | YT1_RS09510 | Not Available | Positive | 1800525 - 1800977 | 15953.4 |
| dna-3-methyladenine glycosylase i | YT1_RS09515 | Not Available | Positive | 1800970 - 1801593 | 23073.2 |
| duf3117 domain-containing protein | YT1_RS09520 | Not Available | Positive | 1801690 - 1801857 | 5676.94 |
| putative rna methyltransferase | YT1_RS09525 | Not Available | Positive | 1801969 - 1802817 | 29645.6 |
| glycogen synthase | YT1_RS09530 | Not Available | Negative | 1802866 - 1804041 | 41929.9 |
| glucose-1-phosphate adenylyltransferase | YT1_RS09535 | Not Available | Positive | 1804128 - 1805342 | 43936.3 |
| o-methyltransferase | YT1_RS09540 | Not Available | Negative | 1805390 - 1806019 | 22282.8 |
| rna polymerase sigma factor sige | YT1_RS09545 | Not Available | Positive | 1806272 - 1806898 | 23358.4 |
| zf-hc2 domain-containing protein | YT1_RS09550 | Not Available | Positive | 1806915 - 1807268 | 12959.5 |
| s1c family serine protease | YT1_RS09555 | Not Available | Positive | 1807554 - 1809005 | 49601.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


