Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pucr family transcriptional regulator | YT1_RS09460 | Not Available | Positive | 1788767 - 1790032 | 46300.6 |
| substrate-binding domain-containing protein | YT1_RS09465 | Not Available | Positive | 1790183 - 1791736 | 53486.1 |
| amino acid permease | YT1_RS09470 | Not Available | Negative | 1791759 - 1793141 | 49182.3 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | YT1_RS09475 | Not Available | Negative | 1793158 - 1794111 | 32903.2 |
| succinyl-diaminopimelate desuccinylase | YT1_RS09480 | Not Available | Positive | 1794185 - 1795261 | 37879.8 |
| tigr00730 family rossman fold protein | YT1_RS09485 | Not Available | Positive | 1795318 - 1796124 | 29248.6 |
| tigr00730 family rossman fold protein | YT1_RS09490 | Not Available | Positive | 1796118 - 1796705 | 20656.7 |
| long-chain-acyl-coa synthetase | YT1_RS09495 | Not Available | Positive | 1796775 - 1798547 | 63646.3 |
| dihydropteroate synthase | YT1_RS09500 | Not Available | Positive | 1798667 - 1799548 | 30735.8 |
| glucosyl-3-phosphoglycerate synthase | YT1_RS09505 | Not Available | Positive | 1799545 - 1800486 | 32895.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


