Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ph domain-containing protein | YT1_RS09410 | Not Available | Negative | 1777894 - 1778436 | 19007.8 |
| hypothetical protein | YT1_RS09415 | Not Available | Positive | 1778547 - 1778735 | 6952.65 |
| bifunctional fo biosynthesis protein cofgh | YT1_RS09420 | Not Available | Positive | 1778796 - 1781423 | 94274.7 |
| hypothetical protein | YT1_RS09425 | Not Available | Positive | 1781420 - 1782121 | 24307.5 |
| ferredoxin | YT1_RS09430 | Not Available | Positive | 1782251 - 1782574 | 11745.8 |
| succinyldiaminopimelate transaminase | YT1_RS09435 | Not Available | Positive | 1782610 - 1783695 | 37998.4 |
| l-glutamate gamma-semialdehyde dehydrogenase | YT1_RS09440 | Not Available | Positive | 1783808 - 1785448 | 59139.8 |
| proline dehydrogenase family protein | YT1_RS09445 | Not Available | Positive | 1785445 - 1786464 | 36116.3 |
| rhomboid family intramembrane serine protease | YT1_RS09450 | Not Available | Positive | 1786541 - 1787212 | 22335.0 |
| acyl-coa synthetase | YT1_RS09455 | Not Available | Positive | 1787218 - 1788636 | 50031.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


