Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | YT1_RS09320 | Not Available | Negative | 1760472 - 1760687 | 8077.38 |
| helix-turn-helix domain-containing protein | YT1_RS09325 | Not Available | Negative | 1760777 - 1761568 | 29073.1 |
| duf1330 domain-containing protein | YT1_RS09330 | Not Available | Positive | 1761696 - 1762031 | 12659.9 |
| mismatch-specific dna-glycosylase | YT1_RS09335 | Not Available | Negative | 1762051 - 1762617 | 19647.7 |
| winged helix-turn-helix domain-containing protein | YT1_RS09340 | Not Available | Positive | 1762776 - 1763720 | 33852.4 |
| duf1906 domain-containing protein | YT1_RS09345 | Not Available | Positive | 1763882 - 1764604 | 25240.3 |
| mfs transporter | YT1_RS09350 | Not Available | Negative | 1764591 - 1766018 | 48634.9 |
| hypothetical protein | YT1_RS09355 | Not Available | Negative | 1766126 - 1766473 | 11813.9 |
| hypothetical protein | YT1_RS09360 | Not Available | Negative | 1766587 - 1767414 | 27174.5 |
| mannosyltransferase | YT1_RS09365 | Not Available | Positive | 1767772 - 1769034 | 45812.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


