Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-phenylpropionate/cinnamic acid dioxygenase subunit beta | YT1_RS01695 | Not Available | Positive | 138389 - 138979 | 22526.5 |
| hypothetical protein | YT1_RS01700 | Not Available | Positive | 138976 - 139299 | 11941.1 |
| ferredoxin | YT1_RS01705 | Not Available | Positive | 139296 - 139490 | 6965.15 |
| nad(p)/fad-dependent oxidoreductase | YT1_RS01710 | Not Available | Positive | 139515 - 140723 | 43158.1 |
| iclr family transcriptional regulator | YT1_RS01715 | Not Available | Positive | 140781 - 141563 | 28314.2 |
| aldo/keto reductase | YT1_RS01720 | Not Available | Positive | 141589 - 142428 | 30827.4 |
| is982 family transposase | YT1_RS01725 | Not Available | Negative | 142473 - 143381 | 33888.8 |
| hypothetical protein | YT1_RS27060 | Not Available | Negative | 143483 - 143632 | 5532.9 |
| is3 family transposase | YT1_RS01730 | Not Available | Positive | 143827 - 145277 | 53180.2 |
| is21-like element helper atpase istb | YT1_RS01735 | Not Available | Negative | 146025 - 146804 | 28083.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


