Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetaldehyde dehydrogenase (acetylating) | YT1_RS09270 | Not Available | Negative | 1751884 - 1752762 | 30721.7 |
| voc family protein | YT1_RS09275 | Not Available | Positive | 1752982 - 1754076 | 40644.7 |
| sigma-70 family rna polymerase sigma factor | YT1_RS09280 | Not Available | Negative | 1754145 - 1755074 | 33089.3 |
| carboxymuconolactone decarboxylase family protein | YT1_RS09285 | Not Available | Positive | 1755150 - 1755605 | 16417.5 |
| hypothetical protein | YT1_RS09290 | Not Available | Positive | 1755702 - 1756091 | 13999.0 |
| hypothetical protein | YT1_RS09295 | Not Available | Positive | 1756184 - 1756603 | 15332.3 |
| polynucleotide kinase | YT1_RS09300 | Not Available | Negative | 1756613 - 1757065 | 17085.4 |
| fumarate hydratase | YT1_RS09305 | Not Available | Negative | 1757167 - 1758864 | 61144.1 |
| cpbp family intramembrane glutamic endopeptidase | YT1_RS09310 | Not Available | Positive | 1759132 - 1759887 | 26255.5 |
| 2'-5' rna ligase family protein | YT1_RS09315 | Not Available | Positive | 1759937 - 1760461 | 19104.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


