Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix transcriptional regulator | YT1_RS09225 | Not Available | Positive | 1743693 - 1743845 | 5317.63 |
| arac family transcriptional regulator | YT1_RS09230 | Not Available | Negative | 1743899 - 1744921 | 37073.7 |
| 4-hydroxyphenylacetate 3-hydroxylase family protein | YT1_RS09235 | Not Available | Positive | 1745131 - 1746693 | 57983.9 |
| nadh-dependent flavin reductase | YT1_RS09240 | Not Available | Positive | 1746707 - 1747234 | 19243.8 |
| helix-turn-helix transcriptional regulator | YT1_RS27625 | Not Available | Positive | 1747402 - 1747563 | 6045.49 |
| hypothetical protein | YT1_RS27630 | Not Available | Positive | 1747655 - 1747978 | 11200.6 |
| tautomerase family protein | YT1_RS09250 | Not Available | Negative | 1748005 - 1748433 | 15287.1 |
| sdr family nad(p)-dependent oxidoreductase | YT1_RS09255 | Not Available | Negative | 1748467 - 1749219 | 25859.3 |
| aldehyde dehydrogenase | YT1_RS09260 | Not Available | Negative | 1749332 - 1750810 | 52476.1 |
| 4-hydroxy-2-oxovalerate aldolase | YT1_RS09265 | Not Available | Negative | 1750826 - 1751887 | 37133.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


