Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate abc transporter permease | YT1_RS09130 | Not Available | Negative | 1723156 - 1724037 | 31861.6 |
| carbohydrate abc transporter permease | YT1_RS09135 | Not Available | Negative | 1724037 - 1725002 | 35107.5 |
| helix-turn-helix transcriptional regulator | YT1_RS09140 | Not Available | Negative | 1724999 - 1726327 | 47654.1 |
| sugar-binding transcriptional regulator | YT1_RS09145 | Not Available | Negative | 1726390 - 1727394 | 34740.6 |
| nad(p)-dependent alcohol dehydrogenase | YT1_RS09150 | Not Available | Positive | 1727540 - 1728556 | 35513.4 |
| mannitol dehydrogenase family protein | YT1_RS09155 | Not Available | Positive | 1728568 - 1730040 | 54156.2 |
| carbohydrate kinase family protein | YT1_RS09160 | Not Available | Positive | 1730037 - 1730963 | 32363.1 |
| xylulokinase | YT1_RS09165 | Not Available | Positive | 1730960 - 1732381 | 47950.5 |
| voc family protein | YT1_RS09170 | Not Available | Positive | 1732529 - 1732999 | 17728.8 |
| mfs transporter | YT1_RS09175 | Not Available | Positive | 1733048 - 1734361 | 46351.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


