Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| exonuclease sbccd subunit d | YT1_RS08985 | Not Available | Positive | 1687476 - 1688651 | 41647.1 |
| aaa family atpase | YT1_RS08990 | Not Available | Positive | 1688648 - 1691623 | 105562.0 |
| ai-2e family transporter | YT1_RS08995 | Not Available | Negative | 1691634 - 1692803 | 40397.5 |
| hypothetical protein | YT1_RS09000 | Not Available | Positive | 1692934 - 1693350 | 13896.1 |
| class i sam-dependent methyltransferase | YT1_RS09005 | Not Available | Positive | 1693337 - 1693978 | 22644.6 |
| redox-regulated atpase ychf | YT1_RS09010 | Not Available | Positive | 1693991 - 1695070 | 38900.5 |
| pseudouridine synthase | YT1_RS09015 | Not Available | Negative | 1695158 - 1696135 | 36033.4 |
| hypothetical protein | YT1_RS09020 | Not Available | Negative | 1696257 - 1697219 | 33837.3 |
| class i sam-dependent methyltransferase | YT1_RS09025 | Not Available | Negative | 1697380 - 1697994 | 21389.3 |
| nitroreductase family deazaflavin-dependent oxidoreductase | YT1_RS09030 | Not Available | Positive | 1698303 - 1698773 | 17785.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


