Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphotriesterase | YT1_RS08935 | Not Available | Negative | 1677446 - 1678420 | 35663.5 |
| class ii fumarate hydratase | YT1_RS08940 | Not Available | Negative | 1678506 - 1679915 | 49821.3 |
| class ii fructose-bisphosphatase | YT1_RS08945 | Not Available | Negative | 1680000 - 1681037 | 35864.1 |
| duf4245 domain-containing protein | YT1_RS08950 | Not Available | Positive | 1681216 - 1681785 | 20044.5 |
| exodeoxyribonuclease vii small subunit | YT1_RS08955 | Not Available | Negative | 1681821 - 1682081 | 9602.85 |
| exodeoxyribonuclease vii large subunit | YT1_RS08960 | Not Available | Negative | 1682092 - 1683339 | 45215.4 |
| lipid droplet-associated protein | YT1_RS08965 | Not Available | Negative | 1683336 - 1684091 | 25736.6 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | YT1_RS08970 | Not Available | Positive | 1684171 - 1685172 | 35787.5 |
| duf6542 domain-containing protein | YT1_RS08975 | Not Available | Negative | 1685203 - 1686174 | 34890.8 |
| dna recombination protein rmuc | YT1_RS08980 | Not Available | Negative | 1686228 - 1687391 | 42258.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


