Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carboxymuconolactone decarboxylase family protein | YT1_RS08885 | Not Available | Negative | 1667195 - 1667605 | 14986.8 |
| limonene-1,2-epoxide hydrolase family protein | YT1_RS08890 | Not Available | Negative | 1667658 - 1668083 | 15518.8 |
| serine hydrolase | YT1_RS08895 | Not Available | Negative | 1668080 - 1669693 | 56750.8 |
| lgfp repeat-containing protein | YT1_RS08900 | Not Available | Positive | 1669949 - 1670536 | 19447.0 |
| nadph:quinone oxidoreductase family protein | YT1_RS08905 | Not Available | Negative | 1670556 - 1671539 | 34646.3 |
| sdr family oxidoreductase | YT1_RS08910 | Not Available | Negative | 1671579 - 1672376 | 26905.2 |
| acyl-coa dehydrogenase family protein | YT1_RS08915 | Not Available | Negative | 1672379 - 1673629 | 45923.3 |
| maoc family dehydratase | YT1_RS08920 | Not Available | Positive | 1673799 - 1674275 | 17140.5 |
| mfs transporter | YT1_RS08925 | Not Available | Negative | 1674342 - 1675709 | 48435.7 |
| amp-binding protein | YT1_RS08930 | Not Available | Positive | 1675875 - 1677392 | 53723.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


