Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | YT1_RS01645 | Not Available | Positive | 129916 - 130161 | 9101.73 |
| hypothetical protein | YT1_RS01650 | Not Available | Positive | 130273 - 130455 | 6579.78 |
| helix-turn-helix domain-containing protein | YT1_RS01655 | Not Available | Positive | 130452 - 130856 | 14159.0 |
| hypothetical protein | YT1_RS01660 | Not Available | Positive | 130892 - 131188 | 11114.2 |
| duf262 domain-containing protein | YT1_RS01665 | Not Available | Positive | 131343 - 133052 | 65239.7 |
| is3 family transposase | YT1_RS01670 | Not Available | Positive | 133110 - 134560 | 53180.2 |
| alpha/beta fold hydrolase | YT1_RS01675 | Not Available | Positive | 134662 - 135576 | 33051.2 |
| helix-turn-helix transcriptional regulator | YT1_RS01680 | Not Available | Positive | 135707 - 135853 | 5318.43 |
| class ii aldolase/adducin family protein | YT1_RS01685 | Not Available | Negative | 136118 - 136843 | 26144.7 |
| aromatic ring-hydroxylating dioxygenase subunit alpha | YT1_RS01690 | Not Available | Positive | 136950 - 138392 | 54661.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


