Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iron uptake transporter deferrochelatase/peroxidase subunit | YT1_RS08700 | Not Available | Negative | 1628158 - 1629423 | 44957.6 |
| iron uptake system protein efeo | YT1_RS08705 | Not Available | Negative | 1629420 - 1630559 | 40256.4 |
| iron uptake transporter permease efeu | YT1_RS08710 | Not Available | Negative | 1630589 - 1631467 | 30085.6 |
| lytic transglycosylase domain-containing protein | YT1_RS08715 | Not Available | Positive | 1631607 - 1632368 | 26268.0 |
| phosphopyruvate hydratase | YT1_RS08720 | Not Available | Positive | 1632521 - 1633807 | 44983.0 |
| ftsb family cell division protein | YT1_RS08725 | Not Available | Positive | 1633818 - 1634480 | 23641.9 |
| duf501 domain-containing protein | YT1_RS08730 | Not Available | Positive | 1634477 - 1635004 | 18385.8 |
| ppx/gppa phosphatase family protein | YT1_RS08735 | Not Available | Positive | 1635001 - 1635957 | 33345.6 |
| Trna-leu | Not Available | Not Available | Positive | 1636084 - 1636160 | Not Available |
| hypothetical protein | YT1_RS08745 | Not Available | Positive | 1636342 - 1637133 | 27689.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


