Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad-dependent epimerase/dehydratase family protein | YT1_RS08650 | Not Available | Negative | 1616694 - 1617734 | 37177.2 |
| pig-l deacetylase family protein | YT1_RS08655 | Not Available | Negative | 1617745 - 1618389 | 24053.8 |
| hypothetical protein | YT1_RS08660 | Not Available | Negative | 1618386 - 1619180 | 30162.8 |
| class i sam-dependent methyltransferase | YT1_RS08665 | Not Available | Negative | 1619177 - 1620433 | 46165.1 |
| effector binding domain-containing protein | YT1_RS08670 | Not Available | Positive | 1620680 - 1621141 | 17003.1 |
| hypothetical protein | YT1_RS08675 | Not Available | Positive | 1621138 - 1621563 | 15395.2 |
| hypothetical protein | YT1_RS08680 | Not Available | Positive | 1621765 - 1622460 | 25849.7 |
| rv1355c family protein | YT1_RS08685 | Not Available | Positive | 1622457 - 1624589 | 77116.0 |
| putative bifunctional diguanylate cyclase/phosphodiesterase | YT1_RS08690 | Not Available | Positive | 1624634 - 1626490 | 67890.6 |
| sugar transferase | YT1_RS08695 | Not Available | Positive | 1626751 - 1628124 | 50248.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


