Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase | YT1_RS08600 | Not Available | Positive | 1603312 - 1605585 | 83328.1 |
| glycosyltransferase family 4 protein | YT1_RS08605 | Not Available | Positive | 1605582 - 1606799 | 45195.5 |
| putative glycoside hydrolase | YT1_RS08610 | Not Available | Negative | 1606801 - 1608237 | 53690.3 |
| heparinase ii/iii family protein | YT1_RS08615 | Not Available | Positive | 1608275 - 1610392 | 77360.0 |
| nucleotide sugar dehydrogenase | YT1_RS08620 | Not Available | Positive | 1610457 - 1611821 | 48877.5 |
| glycosyltransferase family 2 protein | YT1_RS08625 | Not Available | Positive | 1611824 - 1612855 | 37617.7 |
| oligosaccharide flippase family protein | YT1_RS08630 | Not Available | Positive | 1612858 - 1614396 | 53758.6 |
| ydcf family protein | YT1_RS08635 | Not Available | Positive | 1614381 - 1614950 | 20440.8 |
| class i sam-dependent methyltransferase | YT1_RS08640 | Not Available | Negative | 1614917 - 1616047 | 40379.3 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | YT1_RS08645 | Not Available | Positive | 1616119 - 1616673 | 20190.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


