Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | YT1_RS08550 | Not Available | Positive | 1589340 - 1589672 | 11604.8 |
| pin domain-containing protein | YT1_RS08555 | Not Available | Positive | 1589684 - 1590253 | 20725.7 |
| transcription-repair coupling factor | YT1_RS08560 | Not Available | Positive | 1590440 - 1594072 | 130968.0 |
| mazg family protein | YT1_RS08565 | Not Available | Positive | 1594202 - 1595089 | 31808.6 |
| glutamate-1-semialdehyde 2,1-aminomutase | YT1_RS08570 | Not Available | Negative | 1595074 - 1596444 | 48991.3 |
| polysaccharide pyruvyl transferase family protein | YT1_RS08575 | Not Available | Positive | 1596737 - 1598131 | 50569.9 |
| gnat family n-acetyltransferase | YT1_RS08580 | Not Available | Negative | 1598420 - 1599142 | 26879.3 |
| hypothetical protein | YT1_RS08585 | Not Available | Positive | 1599370 - 1600758 | 49032.0 |
| o-antigen ligase family protein | YT1_RS08590 | Not Available | Positive | 1600755 - 1602251 | 52955.1 |
| glycosyltransferase family 4 protein | YT1_RS08595 | Not Available | Positive | 1602248 - 1603315 | 39119.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


