Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pirin family protein | YT1_RS08355 | Not Available | Negative | 1547680 - 1548660 | 34930.5 |
| voc family protein | YT1_RS08360 | Not Available | Negative | 1548661 - 1549170 | 19211.6 |
| doxx family protein | YT1_RS08365 | Not Available | Positive | 1549364 - 1549789 | 14639.3 |
| resuscitation-promoting factor | YT1_RS08370 | Not Available | Positive | 1550498 - 1551625 | 39532.5 |
| hypothetical protein | YT1_RS27125 | Not Available | Positive | 1551868 - 1552032 | 5855.98 |
| 16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsma | YT1_RS08375 | Not Available | Positive | 1552168 - 1553058 | 31449.8 |
| cold-shock protein | YT1_RS08380 | Not Available | Positive | 1553299 - 1553505 | 7304.56 |
| cold-shock protein | YT1_RS08385 | Not Available | Positive | 1553917 - 1554123 | 7205.42 |
| helix-turn-helix transcriptional regulator | YT1_RS08390 | Not Available | Negative | 1554205 - 1555194 | 36267.4 |
| 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase | YT1_RS08395 | Not Available | Positive | 1555270 - 1556196 | 31153.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


