Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | YT1_RS08255 | Not Available | Negative | 1524202 - 1524864 | 23690.3 |
| abc transporter permease | YT1_RS08260 | Not Available | Negative | 1524900 - 1525970 | 35303.6 |
| sensor histidine kinase | YT1_RS08265 | Not Available | Positive | 1526083 - 1527264 | 41236.1 |
| response regulator | YT1_RS08270 | Not Available | Positive | 1527261 - 1527878 | 21443.8 |
| fabp family protein | YT1_RS08275 | Not Available | Negative | 1527882 - 1528349 | 17462.5 |
| arginine deiminase | YT1_RS08280 | Not Available | Positive | 1528465 - 1529697 | 43696.6 |
| arsenate reductase (glutaredoxin) | YT1_RS08285 | Not Available | Negative | 1529694 - 1530041 | 12688.4 |
| gntr family transcriptional regulator | YT1_RS08290 | Not Available | Positive | 1530156 - 1530518 | 13101.9 |
| sam-dependent methyltransferase | YT1_RS08295 | Not Available | Positive | 1530555 - 1531115 | 19109.9 |
| dolichyl-phosphate-mannose--protein mannosyltransferase | YT1_RS08300 | Not Available | Negative | 1531066 - 1532574 | 55362.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


