Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator transcription factor | YT1_RS08165 | Not Available | Positive | 1507573 - 1508259 | 25584.7 |
| sensor histidine kinase | YT1_RS08170 | Not Available | Positive | 1508298 - 1509686 | 49570.6 |
| s1c family serine protease | YT1_RS08175 | Not Available | Positive | 1509790 - 1511037 | 40895.9 |
| molybdenum cofactor biosynthesis protein b | YT1_RS08180 | Not Available | Positive | 1511112 - 1511609 | 16720.8 |
| hypothetical protein | YT1_RS27605 | Not Available | Positive | 1511612 - 1511830 | 7870.83 |
| mspa family porin | YT1_RS08185 | Not Available | Positive | 1512394 - 1513209 | 28733.1 |
| mspa family porin | YT1_RS08190 | Not Available | Positive | 1513262 - 1513900 | 21948.5 |
| large conductance mechanosensitive channel protein mscl | YT1_RS08195 | Not Available | Negative | 1513992 - 1514423 | 15364.7 |
| rcpc/cpab family pilus assembly protein | YT1_RS08200 | Not Available | Negative | 1514589 - 1515278 | 23082.7 |
| fmdb family zinc ribbon protein | YT1_RS08205 | Not Available | Negative | 1515376 - 1515687 | 10426.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


