Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphonate abc transporter, permease protein phne | YT1_RS08115 | Not Available | Positive | 1501038 - 1502591 | 53852.4 |
| zinc-binding dehydrogenase | YT1_RS08120 | Not Available | Positive | 1502567 - 1503580 | 34185.1 |
| duf559 domain-containing protein | YT1_RS08125 | Not Available | Negative | 1503654 - 1504520 | 31592.8 |
| 30s ribosomal protein s18 | YT1_RS08130 | Not Available | Negative | 1504714 - 1504974 | 9745.99 |
| 30s ribosomal protein s14 | YT1_RS08135 | Not Available | Negative | 1504985 - 1505290 | 11556.0 |
| 50s ribosomal protein l33 | YT1_RS08140 | Not Available | Negative | 1505294 - 1505458 | 6557.95 |
| 50s ribosomal protein l28 | YT1_RS08145 | Not Available | Negative | 1505458 - 1505694 | 8772.65 |
| ribosome hibernation factor-recruiting gtpase mrf | YT1_RS08150 | Not Available | Positive | 1505812 - 1507026 | 44153.1 |
| type b 50s ribosomal protein l31 | YT1_RS08155 | Not Available | Positive | 1507023 - 1507277 | 9557.19 |
| 50s ribosomal protein l32 | YT1_RS08160 | Not Available | Positive | 1507302 - 1507475 | 6367.85 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


