Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinate--coa ligase subunit alpha | YT1_RS08020 | Not Available | Positive | 1481039 - 1481941 | 30698.0 |
| impact family protein | YT1_RS08025 | Not Available | Negative | 1482023 - 1482646 | 22045.1 |
| duf5336 domain-containing protein | YT1_RS08030 | Not Available | Positive | 1482754 - 1483986 | 40998.2 |
| duf6350 family protein | YT1_RS08035 | Not Available | Positive | 1484053 - 1485708 | 56052.7 |
| phosphoribosylglycinamide formyltransferase | YT1_RS08040 | Not Available | Positive | 1485763 - 1486410 | 22488.9 |
| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase | YT1_RS08045 | Not Available | Positive | 1486397 - 1487962 | 54777.5 |
| hypothetical protein | YT1_RS08050 | Not Available | Negative | 1487990 - 1488226 | 8069.62 |
| alpha/beta hydrolase family protein | YT1_RS08055 | Not Available | Negative | 1488542 - 1489501 | 33122.2 |
| duf4126 domain-containing protein | YT1_RS08060 | Not Available | Negative | 1489524 - 1490096 | 19313.1 |
| sigma 54-interacting transcriptional regulator | YT1_RS08065 | Not Available | Positive | 1490240 - 1491625 | 50142.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


