Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hpp family protein | YT1_RS07870 | Not Available | Negative | 1447108 - 1447560 | 16096.8 |
| universal stress protein | YT1_RS07875 | Not Available | Positive | 1447708 - 1448658 | 33603.6 |
| llm class f420-dependent oxidoreductase | YT1_RS07880 | Not Available | Positive | 1448750 - 1449790 | 37682.2 |
| universal stress protein | YT1_RS07885 | Not Available | Positive | 1449837 - 1450739 | 31665.9 |
| hypothetical protein | YT1_RS07890 | Not Available | Negative | 1450911 - 1451204 | 10524.4 |
| acyl-acp desaturase | YT1_RS07895 | Not Available | Negative | 1451201 - 1452154 | 35769.2 |
| hypothetical protein | YT1_RS07900 | Not Available | Negative | 1452216 - 1453178 | 34659.0 |
| response regulator | YT1_RS07905 | Not Available | Positive | 1453319 - 1453957 | 23017.0 |
| gaf domain-containing protein | YT1_RS07910 | Not Available | Negative | 1453968 - 1455599 | 57654.0 |
| nicotinate phosphoribosyltransferase | YT1_RS07915 | Not Available | Positive | 1455819 - 1457171 | 48415.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


