Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | YT1_RS01545 | Not Available | Negative | 107474 - 107950 | 17102.2 |
| duf5372 family protein | YT1_RS01550 | Not Available | Negative | 108125 - 108403 | 10527.2 |
| mu transposase c-terminal domain-containing protein | YT1_RS01555 | Not Available | Positive | 108487 - 109335 | 31730.4 |
| atp-binding protein | YT1_RS01560 | Not Available | Positive | 109326 - 110354 | 37339.5 |
| tniq family protein | YT1_RS01565 | Not Available | Positive | 110363 - 111241 | 33117.7 |
| site-specific integrase | YT1_RS01570 | Not Available | Positive | 111525 - 112691 | 41482.3 |
| hypothetical protein | YT1_RS01575 | Not Available | Positive | 112693 - 113709 | 37448.4 |
| cytochrome p450 | YT1_RS01580 | Not Available | Positive | 113855 - 114316 | 17462.6 |
| duf4038 domain-containing protein | YT1_RS01585 | Not Available | Negative | 114470 - 115897 | 52115.1 |
| is3 family transposase | YT1_RS01590 | Not Available | Positive | 116893 - 118118 | 46725.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


