Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sensor histidine kinase | YT1_RS07715 | Not Available | Positive | 1418568 - 1419785 | 42831.4 |
| lytr/algr family response regulator transcription factor | YT1_RS07720 | Not Available | Positive | 1419874 - 1420662 | 28635.3 |
| hypothetical protein | YT1_RS07725 | Not Available | Positive | 1420785 - 1421090 | 11284.1 |
| cation acetate symporter | YT1_RS07730 | Not Available | Positive | 1421098 - 1422909 | 61806.2 |
| duf485 domain-containing protein | YT1_RS07735 | Not Available | Positive | 1423070 - 1423432 | 13550.5 |
| cation acetate symporter | YT1_RS07740 | Not Available | Positive | 1423453 - 1425087 | 56495.4 |
| srpbcc family protein | YT1_RS07745 | Not Available | Positive | 1425159 - 1425590 | 15488.6 |
| atp-dependent dna ligase | YT1_RS07750 | Not Available | Positive | 1425692 - 1427953 | 82939.1 |
| merr family transcriptional regulator | YT1_RS07755 | Not Available | Negative | 1427986 - 1428690 | 25922.7 |
| erythromycin esterase family protein | YT1_RS07760 | Not Available | Positive | 1428804 - 1430021 | 42997.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


