Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aldo/keto reductase | YT1_RS07615 | Not Available | Positive | 1400126 - 1400950 | 30320.5 |
| transposase | YT1_RS07620 | Not Available | Negative | 1401089 - 1402774 | 58992.7 |
| pyridoxamine 5'-phosphate oxidase family protein | YT1_RS07625 | Not Available | Positive | 1403039 - 1403485 | 16252.1 |
| s1c family serine protease | YT1_RS07630 | Not Available | Negative | 1403562 - 1404626 | 35458.4 |
| nad(p)-binding domain-containing protein | YT1_RS07635 | Not Available | Negative | 1404623 - 1405723 | 39549.8 |
| spfh domain-containing protein | YT1_RS07640 | Not Available | Positive | 1405922 - 1406809 | 31542.8 |
| hypothetical protein | YT1_RS07645 | Not Available | Positive | 1406825 - 1407025 | 7563.15 |
| enoyl-coa hydratase | YT1_RS07650 | Not Available | Positive | 1407096 - 1407827 | 25691.7 |
| mbl fold metallo-hydrolase | YT1_RS07655 | Not Available | Positive | 1407927 - 1409042 | 40100.6 |
| zip family metal transporter | YT1_RS07660 | Not Available | Positive | 1409136 - 1409900 | 25472.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


