Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| citrate synthase 2 | YT1_RS07470 | Not Available | Negative | 1371690 - 1372817 | 40377.2 |
| pyridoxamine 5'-phosphate oxidase | YT1_RS07475 | Not Available | Positive | 1373063 - 1373716 | 24385.7 |
| mfs transporter | YT1_RS07480 | Not Available | Positive | 1373713 - 1374981 | 44046.1 |
| hypothetical protein | YT1_RS07485 | Not Available | Positive | 1375069 - 1375356 | 9335.37 |
| mbl fold metallo-hydrolase | YT1_RS07490 | Not Available | Negative | 1375457 - 1376374 | 32669.0 |
| aldose 1-epimerase family protein | YT1_RS07495 | Not Available | Positive | 1376505 - 1377443 | 34374.4 |
| citrate synthase | YT1_RS07500 | Not Available | Positive | 1377743 - 1379041 | 48086.3 |
| helix-turn-helix transcriptional regulator | YT1_RS27595 | Not Available | Positive | 1379068 - 1379418 | 12343.7 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | YT1_RS27600 | Not Available | Positive | 1379422 - 1379793 | 12918.3 |
| hypothetical protein | YT1_RS07510 | Not Available | Negative | 1379867 - 1380154 | 10659.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


