Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helicase-associated domain-containing protein | YT1_RS07370 | Not Available | Negative | 1352676 - 1354958 | 79522.2 |
| hypothetical protein | YT1_RS07375 | Not Available | Positive | 1355019 - 1355207 | 6870.0 |
| resuscitation-promoting factor rpf1 domain-containing protein | YT1_RS07380 | Not Available | Negative | 1355272 - 1355856 | 19769.7 |
| yccf domain-containing protein | YT1_RS07385 | Not Available | Negative | 1356303 - 1356695 | 13837.9 |
| hypothetical protein | YT1_RS07390 | Not Available | Negative | 1356692 - 1356934 | 8371.46 |
| cold-shock protein | YT1_RS07395 | Not Available | Positive | 1357102 - 1357512 | 15141.3 |
| duf2771 family protein | YT1_RS07400 | Not Available | Negative | 1357577 - 1358044 | 16277.8 |
| mfs transporter | YT1_RS07405 | Not Available | Negative | 1358041 - 1359732 | 58888.4 |
| glutaminyl-peptide cyclotransferase | YT1_RS07410 | Not Available | Negative | 1359790 - 1360596 | 28804.0 |
| duf3027 domain-containing protein | YT1_RS07415 | Not Available | Positive | 1360646 - 1361731 | 36725.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


