Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf5313 family protein | YT1_RS01490 | Not Available | Negative | 95022 - 95399 | 14542.0 |
| amp-dependent synthetase/ligase | YT1_RS01495 | Not Available | Negative | 95419 - 97257 | 67363.3 |
| tnsa-like heteromeric transposase endonuclease subunit | YT1_RS01505 | Not Available | Positive | 97919 - 98665 | 28190.4 |
| mu transposase c-terminal domain-containing protein | YT1_RS01510 | Not Available | Positive | 98665 - 100773 | 76632.4 |
| tnib family ntp-binding protein | YT1_RS01515 | Not Available | Positive | 100770 - 101798 | 37738.2 |
| tniq family protein | YT1_RS01520 | Not Available | Positive | 101795 - 102775 | 37407.2 |
| tnsa-like heteromeric transposase endonuclease subunit | YT1_RS01525 | Not Available | Positive | 102853 - 103734 | 32658.8 |
| integrase catalytic domain-containing protein | YT1_RS01530 | Not Available | Positive | 103850 - 104971 | 41483.9 |
| recombinase family protein | YT1_RS01535 | Not Available | Negative | 104999 - 107062 | 75750.4 |
| hypothetical protein | YT1_RS01540 | Not Available | Negative | 107077 - 107310 | 7401.04 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


