Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | YT1_RS07320 | Not Available | Positive | 1341264 - 1342136 | 30519.1 |
| llm class flavin-dependent oxidoreductase | YT1_RS07325 | Not Available | Positive | 1342170 - 1343519 | 48871.4 |
| llm class f420-dependent oxidoreductase | YT1_RS07330 | Not Available | Positive | 1343623 - 1344609 | 36448.3 |
| gnat family n-acetyltransferase | YT1_RS07335 | Not Available | Negative | 1344623 - 1345186 | 20222.1 |
| duf3239 domain-containing protein | YT1_RS07340 | Not Available | Negative | 1345189 - 1345857 | 24297.6 |
| hypothetical protein | YT1_RS07345 | Not Available | Negative | 1345963 - 1346391 | 15081.8 |
| citmhs family transporter | YT1_RS07350 | Not Available | Positive | 1347135 - 1348541 | 48521.0 |
| sensor histidine kinase | YT1_RS07355 | Not Available | Positive | 1348610 - 1350283 | 58114.0 |
| response regulator | YT1_RS07360 | Not Available | Positive | 1350265 - 1350933 | 22927.4 |
| dna repair helicase xpb | YT1_RS07365 | Not Available | Negative | 1350941 - 1352599 | 61078.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


