Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ectoine hydroxylase | YT1_RS07270 | Not Available | Negative | 1332213 - 1333100 | 32096.5 |
| zinc-binding dehydrogenase | YT1_RS07275 | Not Available | Positive | 1333269 - 1334312 | 36121.7 |
| voc family protein | YT1_RS07280 | Not Available | Positive | 1334343 - 1334768 | 15466.2 |
| arac family transcriptional regulator | YT1_RS07285 | Not Available | Negative | 1334778 - 1335773 | 36642.2 |
| pyridoxal phosphate-dependent aminotransferase | YT1_RS07290 | Not Available | Negative | 1335776 - 1336969 | 42954.2 |
| carboxymuconolactone decarboxylase family protein | YT1_RS07295 | Not Available | Positive | 1337088 - 1337699 | 22048.9 |
| voc family protein | YT1_RS07300 | Not Available | Negative | 1337681 - 1338094 | 15116.9 |
| sigma-70 family rna polymerase sigma factor | YT1_RS07305 | Not Available | Negative | 1338105 - 1339016 | 32127.4 |
| abc transporter substrate-binding protein | YT1_RS07310 | Not Available | Positive | 1339380 - 1340456 | 38479.6 |
| abc transporter atp-binding protein | YT1_RS07315 | Not Available | Positive | 1340453 - 1341271 | 30335.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


