Rhodococcus ruber strain YC-YT1

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber strain YC-YT1 is a Gram-positive bacterium predominantly found in soil environments. This strain is characterized by the presence of flagella, which may contribute to its motility and ability to adapt to various soil conditions. Notably, it possesses a single replicon, which is indicative of its genomic organization. The genomic information for this strain is cataloged under the accession number NZ_CP023714.1. Rhodococcus species, including R. ruber, are known for their metabolic versatility, allowing them to degrade a wide range of organic compounds. This adaptability makes them important in bioremediation processes, where they can break down pollutants in contaminated soils. The ability to thrive in diverse soil habitats suggests that R. ruber strain YC-YT1 may play a significant role in soil ecology, potentially influencing nutrient cycling and the degradation of organic materials. Overall, the traits of Rhodococcus ruber strain YC-YT1 highlight its ecological importance and potential applications in environmental microbiology, particularly in the context of soil health and bioremediation efforts.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
Strainstrain YC-YT1

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain YC-YT1 chromosome, complete genome.

Gene Summary

Adenine Count

838143 bp

Thymine Count

839814 bp

Guanine Count

1998922 bp

Cytosine Count

1992973 bp

Genome Length

5669852 bp

Protein-coding Genes

5139 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
had-ib family hydrolaseYT1_RS07120Not AvailableNegative1295886 - 129731351421.4
glycerol-3-phosphate 1-o-acyltransferaseYT1_RS07125Not AvailableNegative1297310 - 129966187609.6
bifunctional aminoglycoside phosphotransferase/atp-binding proteinYT1_RS07130Not AvailablePositive1299832 - 130131353495.5
vit family proteinYT1_RS07135Not AvailablePositive1301366 - 130209124514.6
universal stress proteinYT1_RS07140Not AvailableNegative1302131 - 130302431005.1
zinc-binding alcohol dehydrogenase family proteinYT1_RS07145Not AvailableNegative1303077 - 130409635818.6
cyth and chad domain-containing proteinYT1_RS07150Not AvailableNegative1304199 - 130572557262.8
flavodoxin domain-containing proteinYT1_RS07155Not AvailablePositive1305953 - 130648618988.2
acg family fmn-binding oxidoreductaseYT1_RS07160Not AvailablePositive1306476 - 130748335821.2
srpbcc domain-containing proteinYT1_RS07165Not AvailableNegative1307499 - 130800518987.0

Displaying genes 1241 – 1250 of 5228 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.