Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferredoxin | YT1_RS07065 | Not Available | Positive | 1286587 - 1286781 | 7139.6 |
| hypothetical protein | YT1_RS07070 | Not Available | Positive | 1286799 - 1287350 | 21056.5 |
| hypothetical protein | YT1_RS07075 | Not Available | Positive | 1287344 - 1288603 | 45641.2 |
| fad-dependent oxidoreductase | YT1_RS07080 | Not Available | Negative | 1288709 - 1290175 | 51360.7 |
| llm class f420-dependent oxidoreductase | YT1_RS07085 | Not Available | Negative | 1290204 - 1291055 | 31310.9 |
| tetr family transcriptional regulator | YT1_RS07090 | Not Available | Positive | 1291217 - 1291864 | 23401.2 |
| hypothetical protein | YT1_RS07095 | Not Available | Negative | 1291914 - 1292738 | 27051.4 |
| methionine/alanine import family nss transporter small subunit | YT1_RS07100 | Not Available | Negative | 1292951 - 1293088 | 4735.75 |
| sodium-dependent transporter | YT1_RS07105 | Not Available | Negative | 1293085 - 1294626 | 54803.1 |
| ybhn family protein | YT1_RS07110 | Not Available | Negative | 1294726 - 1295889 | 40478.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


