Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carboxymuconolactone decarboxylase family protein | YT1_RS07015 | Not Available | Negative | 1276984 - 1277343 | 13387.2 |
| nad(p)-dependent oxidoreductase | YT1_RS07020 | Not Available | Negative | 1277340 - 1278206 | 29333.3 |
| sdr family oxidoreductase | YT1_RS07025 | Not Available | Negative | 1278203 - 1278964 | 26549.6 |
| aldehyde dehydrogenase | YT1_RS07030 | Not Available | Negative | 1278970 - 1280451 | 51848.6 |
| tetr/acrr family transcriptional regulator | YT1_RS07035 | Not Available | Negative | 1280688 - 1281281 | 21073.1 |
| cytochrome p450 | YT1_RS07040 | Not Available | Positive | 1281368 - 1282591 | 45222.5 |
| tetr/acrr family transcriptional regulator | YT1_RS07045 | Not Available | Positive | 1282658 - 1283218 | 20222.2 |
| cytochrome p450 | YT1_RS07050 | Not Available | Positive | 1283222 - 1284433 | 44773.0 |
| sdr family oxidoreductase | YT1_RS07055 | Not Available | Positive | 1284426 - 1285226 | 28464.1 |
| cytochrome p450 | YT1_RS07060 | Not Available | Positive | 1285223 - 1286575 | 50846.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


