Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-asp | Not Available | Not Available | Positive | 1268927 - 1269000 | Not Available |
| Trna-phe | Not Available | Not Available | Positive | 1269038 - 1269114 | Not Available |
| Trna-asp | Not Available | Not Available | Positive | 1269186 - 1269259 | Not Available |
| class i adenylate-forming enzyme family protein | YT1_RS06980 | Not Available | Negative | 1269316 - 1271001 | 60574.3 |
| cyclase family protein | YT1_RS06985 | Not Available | Negative | 1270998 - 1271966 | 35219.2 |
| glycosyltransferase family 4 protein | YT1_RS06990 | Not Available | Positive | 1272316 - 1273554 | 44511.6 |
| class i sam-dependent methyltransferase | YT1_RS06995 | Not Available | Positive | 1273554 - 1274285 | 26726.9 |
| hypothetical protein | YT1_RS07000 | Not Available | Positive | 1274272 - 1275372 | 40225.0 |
| class i sam-dependent methyltransferase | YT1_RS07005 | Not Available | Negative | 1275377 - 1276036 | 23342.3 |
| sdr family nad(p)-dependent oxidoreductase | YT1_RS07010 | Not Available | Negative | 1276148 - 1276918 | 26280.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


